STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0678KEGG: kol:Kole_1187 major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; manually curated. (175 aa)    
Predicted Functional Partners:
Toce_0679
KEGG: dat:HRM2_41620 permease of the major facilitator superfamily; SPTR: Permease of the major facilitator superfamily.
      0.822
Toce_1588
COGs: COG0438 Glycosyltransferase; InterProIPR001296:IPR013216:IPR001173:IPR019734:IPR 013026:IPR000276; KEGG: tnp:Tnap_0554 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; SMART: Tetratricopeptide repeat; SPTR: Glycosyl transferase family 2; PFAM: Methyltransferase domain; Glycosyl transferases group 1; Glycosyl transferase family 2.
 
  
 0.618
Toce_1815
InterPro IPR011701; KEGG: gur:Gura_0249 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Putative uncharacterized protein; PFAM: Major Facilitator Superfamily.
  
     0.490
Toce_2076
GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: chy:CHY_1870 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family.
  
     0.468
Toce_0676
Abortive infection protein; InterPro IPR003675; KEGG: tfu:Tfu_1444 hypothetical protein; PFAM: Abortive infection protein; SPTR: Putative uncharacterized protein; PFAM: CAAX amino terminal protease family.
       0.433
Toce_0677
Hypothetical protein.
       0.432
Toce_0462
Protein of unknown function DUF92 transmembrane; COGs: COG1836 membrane protein; InterPro IPR000374:IPR002794; KEGG: hmo:HM1_2282 hypothetical protein; PFAM: protein of unknown function DUF92 transmembrane; phosphatidate cytidylyltransferase; SPTR: Putative uncharacterized protein; PFAM: Cytidylyltransferase family; Integral membrane protein DUF92; TIGRFAM: conserved hypothetical protein TIGR00297.
 
     0.403
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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