STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0718InterPro IPR018649; KEGG: sat:SYN_02429 hypothetical protein; PFAM: Protein of unknown function DUF2078, membrane; SPTR: Hypothetical membrane protein; PFAM: Predicted membrane protein (DUF2078). (85 aa)    
Predicted Functional Partners:
Toce_2002
Hypothetical protein; InterPro IPR020365; KEGG: dau:Daud_1896 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.558
Toce_0271
InterPro IPR011701; KEGG: dge:Dgeo_1065 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
  
     0.483
Toce_0631
KEGG: tte:TTE0927 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.422
Toce_1971
KEGG: nth:Nther_2043 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.416
Toce_0875
KEGG: tte:TTE2401 hypothetical protein; SPTR: Putative transmembrane anti-sigma factor; PFAM: Predicted integral membrane protein (DUF2275).
  
     0.410
Toce_0719
Transposase IS4 family protein; COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: tte:TTE2646 transposase; PFAM: transposase IS4 family protein; SPTR: Transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772).
       0.407
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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