Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0729Hypothetical protein; KEGG: dvi:Dvir_GJ19935 GJ19935 gene product from transcript GJ19935-RA; SPTR: GJ19935. (43 aa)    
Predicted Functional Partners:
Toce_0728
KEGG: pth:PTH_0184 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.497
Toce_0730
Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR005829:IPR001411:IPR011701; KEGG: mta:Moth_0116 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
       0.497
Toce_0727
Conserved hypothetical protein; InterPro IPR016571; KEGG: tpd:Teth39_0700 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.454
Toce_0726
COGs: COG3546 Mn-containing catalase; InterPro IPR007760; KEGG: hmo:HM1_1323 manganese-containing, non-heme catalase; PFAM: manganese containing catalase; SPTR: Manganese-containing, non-heme catalase; PFAM: Manganese containing catalase.
       0.431
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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