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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0730Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR005829:IPR001411:IPR011701; KEGG: mta:Moth_0116 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily. (406 aa)    
Predicted Functional Partners:
Toce_2237
InterPro IPR020390; KEGG: drm:Dred_1679 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2619).
 
    0.817
Toce_2241
Protein of unknown function DUF441; COGs: COG2707 membrane protein; InterPro IPR007382; KEGG: mta:Moth_0120 hypothetical protein; PFAM: protein of unknown function DUF441; SPTR: UPF0756 membrane protein Moth_0120; PFAM: Protein of unknown function (DUF441).
 
     0.693
Toce_0973
KEGG: drm:Dred_1157 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.593
Toce_0729
Hypothetical protein; KEGG: dvi:Dvir_GJ19935 GJ19935 gene product from transcript GJ19935-RA; SPTR: GJ19935.
       0.497
Toce_1588
COGs: COG0438 Glycosyltransferase; InterProIPR001296:IPR013216:IPR001173:IPR019734:IPR 013026:IPR000276; KEGG: tnp:Tnap_0554 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; SMART: Tetratricopeptide repeat; SPTR: Glycosyl transferase family 2; PFAM: Methyltransferase domain; Glycosyl transferases group 1; Glycosyl transferase family 2.
 
  
 0.482
Toce_1318
InterPro IPR014194; KEGG: dae:Dtox_2607 stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; SPTR: Stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
     0.477
Toce_2198
InterPro IPR018126; KEGG: tit:Thit_2217 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Small, acid-soluble spore proteins, alpha/beta type.
  
     0.469
Toce_0648
Transcriptional regulator, CdaR; COGs: COG3835 Sugar diacid utilization regulator; InterPro IPR008599:IPR002197; KEGG: putative sugar diacid recognition; PFAM: sugar diacid recognition domain protein; helix-turn-helix Fis-type; SPTR: Putative sugar diacid utilization regulator; PFAM: Putative sugar diacid recognition.
  
    0.451
Toce_0974
KEGG: amt:Amet_2861 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.434
Toce_1133
KEGG: chy:CHY_0535 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.410
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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