Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0752COGs: COG1530 Ribonuclease G and E; InterProIPR003029:IPR002792:IPR004659:IPR018247:IPR 000463:IPR019307; KEGG: sth:STH426 ribonuclease G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein; deoxyribonuclease/rho motif-related TRAM; SPTR: Ribonuclease G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; TRAM domain; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family. (563 aa)    
Predicted Functional Partners:
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.901
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
   
 
 0.832
Toce_0863
Conserved hypothetical protein; Displays ATPase and GTPase activities.
   
 
 0.816
Toce_0750
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: tit:Thit_0845 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily.
       0.798
Toce_0751
Protein of unknown function DUF2344; COGs: COG5011 conserved hypothetical protein; InterPro IPR018768; KEGG: dau:Daud_1454 hypothetical protein; PFAM: Protein of unknown function DUF2344; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2344).
       0.798
Toce_2281
Single-stranded nucleic acid binding R3H domain protein; COGs: COG1847 RNA-binding protein; InterPro IPR001374:IPR004087; KEGG: pth:PTH_2918 RNA binding protein; PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KH domain protein; SPTR: Predicted RNA binding protein; PFAM: R3H domain.
   
 
 0.796
Toce_1067
COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR004088:IPR020627; KEGG: nth:Nther_1370 RNA-binding protein (KH domain); SPTR: RNA-binding protein (KH domain); PFAM: KH domain; Belongs to the UPF0109 family.
    
   0.769
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
 
    0.743
Toce_0749
Peptidase M50; InterPro IPR008915; KEGG: nth:Nther_0524 peptidase M50; PFAM: peptidase M50; SPTR: Peptidase M50; PFAM: Peptidase family M50.
       0.730
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.700
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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