Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Toce_07793D domain protein; COGs: COG3583 conserved hypothetical protein; InterPro IPR011098:IPR007137:IPR010611; KEGG: mta:Moth_0051 hypothetical protein; PFAM: 3D domain protein; G5 domain protein; protein of unknown function DUF348; SPTR: Putative uncharacterized protein; PFAM: 3D domain; Domain of unknown function (DUF348); G5 domain. (319 aa)    
Predicted Functional Partners:
Toce_0040
Spore coat assembly protein SafA; InterPro IPR014248:IPR018392:IPR002482; KEGG: hor:Hore_21410 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: Peptidoglycan-binding LysM; TIGRFAM: spore coat assembly protein SafA; PFAM: LysM domain; TIGRFAM: spore coat assembly protein SafA.
  
  
 0.947
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.786
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.698
Toce_0029
Hydrolase, TatD family; COGs: COG0084 Mg-dependent DNase; InterPro IPR012278:IPR015991:IPR001130; KEGG: tit:Thit_0099 hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; SPTR: Hydrolase, TatD family; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family.
     
 0.654
Toce_0631
KEGG: tte:TTE0927 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.578
Toce_1032
COGs: COG0515 Serine/threonine protein kinase; InterProIPR020635:IPR002290:IPR005543:IPR017442:IPR 017441:IPR008271:IPR000719; KEGG: tpd:Teth39_1313 serine/threonine protein kinase with PASTA sensor(s); PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; PASTA domain containing protein; SPTR: Serine/threonine protein kinase with PASTA sensor(S); PFAM: Protein kinase domain; PASTA domain.
      
 0.514
Toce_1657
KEGG: drm:Dred_1389 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.508
Toce_0956
Protein of unknown function DUF881; COGs: COG3879 conserved hypothetical protein; InterPro IPR010273; KEGG: tte:TTE1642 hypothetical protein; PFAM: protein of unknown function DUF881; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF881).
 
     0.489
Toce_1407
Protein of unknown function DUF445; COGs: COG4399 conserved hypothetical protein; InterPro IPR007383; KEGG: aoe:Clos_1981 putative membrane protin; PFAM: protein of unknown function DUF445; SPTR: Putative membrane protin; PFAM: Protein of unknown function (DUF445).
     
 0.471
Toce_1592
DegT/DnrJ/EryC1/StrS aminotransferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653; KEGG: tte:TTE0651 cell wall biogenesis regulatory protein; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; SPTR: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
     
 0.469
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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