Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0855KEGG: amt:Amet_4434 hypothetical protein; SPTR: Putative uncharacterized protein. (166 aa)    
Predicted Functional Partners:
Toce_0569
KEGG: hor:Hore_05240 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1113).
   
    0.652
Toce_0854
KEGG: tet:TTHERM_00006350 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.561
Toce_0856
Hypothetical protein.
       0.460
Toce_0857
Magnesium transporter; Acts as a magnesium transporter.
       0.446
Toce_0858
Magnesium transporter; Acts as a magnesium transporter.
       0.431
Toce_1146
Conserved hypothetical protein; COGs: COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase; InterPro IPR006058; KEGG: tex:Teth514_1576 hypothetical protein; SPTR: Oxidoreductase FAD-binding domain protein.
   
    0.425
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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