Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0878ErfK/YbiS/YcfS/YnhG family protein; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: cbi:CLJ_B0018 ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain. (436 aa)    
Predicted Functional Partners:
Toce_0879
Nucleoside recognition domain protein; COGs: COG2715 Uncharacterized membrane protein required for spore maturation in B.subtilis; InterPro IPR011642; KEGG: cpo:COPRO5265_1366 spore maturation protein A; PFAM: nucleoside recognition domain protein; SPTR: Spore maturation protein A; PFAM: Nucleoside recognition.
  
    0.782
Toce_0880
Nucleoside recognition domain protein; COGs: COG0700 membrane protein; InterPro IPR011642; KEGG: cpo:COPRO5265_1365 spore maturation protein B; PFAM: nucleoside recognition domain protein; SPTR: Spore maturation protein B.
  
    0.694
Toce_1738
Protein of unknown function DUF990; COGs: COG3694 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: sth:STH1199 hypothetical protein; PFAM: protein of unknown function DUF990; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF990).
  
     0.666
Toce_0875
KEGG: tte:TTE2401 hypothetical protein; SPTR: Putative transmembrane anti-sigma factor; PFAM: Predicted integral membrane protein (DUF2275).
 
    0.624
Toce_1888
S-layer domain protein; InterPro IPR005075:IPR001119; KEGG: dsy:DSY4050 hypothetical protein; PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; SPTR: Putative uncharacterized protein; PFAM: S-layer homology domain; Peptidase propeptide and YPEB domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
  
     0.613
Toce_0251
COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR003953:IPR003042; KEGG: nth:Nther_1774 FAD dependent oxidoreductase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; SPTR: FAD dependent oxidoreductase; PFAM: FAD binding domain.
  
     0.608
Toce_2017
Protein of unknown function DUF1779; InterPro IPR014794; KEGG: tpd:Teth39_2101 hypothetical protein; PFAM: Protein of unknown function DUF1779; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1779).
  
     0.586
Toce_0877
KEGG: tpd:Teth39_0292 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.571
Toce_2007
KEGG: swo:Swol_2165 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.518
Toce_2002
Hypothetical protein; InterPro IPR020365; KEGG: dau:Daud_1896 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.511
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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