STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0884Hypothetical protein; KEGG: tca:660533 similar to CG1915-PC, isoform C; SPTR: Predicted protein. (68 aa)    
Predicted Functional Partners:
Toce_0885
KEGG: amt:Amet_3059 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.714
Toce_0883
Appr-1-p processing domain protein; COGs: COG2110 phosphatase homologous to the C-terminal domain of histone macroH2A1; InterPro IPR002589; KEGG: cpo:COPRO5265_1362 Appr-1-p processing enzyme family protein; PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; SPTR: Appr-1-p processing enzyme family protein; PFAM: Macro domain.
       0.511
Toce_0882
KEGG: cpo:COPRO5265_1363 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.476
Toce_0886
OsmC family protein; COGs: COG1765 redox protein regulator of disulfide bond formation; InterPro IPR003718; KEGG: cpo:COPRO5265_1361 conserved protein with OsmC domain; PFAM: OsmC family protein; SPTR: Conserved protein with OsmC domain; PFAM: OsmC-like protein.
       0.451
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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