Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Toce_0890KEGG: cbb:CLD_1205 hypothetical protein; SPTR: Putative uncharacterized protein. (120 aa)    
Predicted Functional Partners:
Toce_0891
KEGG: dau:Daud_0054 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.522
atpE-2
H+transporting two-sector ATPase E subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.490
Toce_1996
KEGG: tex:Teth514_0476 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.465
Toce_2044
COGs: COG1527 H+-ATPase subunit C; InterPro IPR002843; KEGG: tpd:Teth39_2261 V-type ATP synthase subunit C; PFAM: H+transporting two-sector ATPase C (AC39) subunit; SPTR: H(+)-transporting two-sector ATPase; PFAM: ATP synthase (C/AC39) subunit.
  
     0.465
Toce_1749
Peptidoglycan-binding domain 1 protein; InterPro IPR002477; KEGG: aoe:Clos_2845 peptidoglycan binding domain-containing protein; PFAM: Peptidoglycan-binding domain 1 protein; SPTR: Peptidoglycan-binding domain 1 protein; PFAM: Putative peptidoglycan binding domain.
  
     0.420
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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