Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Toce_0894ADP-ribosylation/Crystallin J1; COGs: COG1397 ADP-ribosylglycohydrolase; InterPro IPR005502; KEGG: sti:Sthe_0600 ADP-ribosylation/crystallin J1; PFAM: ADP-ribosylation/Crystallin J1; SPTR: ADP-ribosylation/Crystallin J1; manually curated; PFAM: ADP-ribosylglycohydrolase. (162 aa)    
Predicted Functional Partners:
Toce_0603
PII family protein; InterPro IPR002187; KEGG: chy:CHY_1194 PII family protein; SPTR: Putative uncharacterized protein; PFAM: Nitrogen regulatory protein P-II.
   
 
 0.676
Toce_0604
PII family protein; InterPro IPR002187; KEGG: chy:CHY_1194 PII family protein; SPTR: PII family protein; PFAM: Nitrogen regulatory protein P-II.
   
 
 0.676
Toce_0893
Xylose isomerase domain protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: ctc:CTC00572 hypothetical protein; PFAM: Xylose isomerase domain protein TIM barrel; SPTR: Conserved protein; PFAM: Xylose isomerase-like TIM barrel.
     
 0.578
Toce_0892
COGs: COG4912 DNA alkylation repair protein; InterPro IPR014825; KEGG: hor:Hore_01880 DNA alkylation repair enzyme; PFAM: DNA alkylation repair enzyme; SPTR: DNA alkylation repair enzyme; PFAM: DNA alkylation repair enzyme.
       0.470
Toce_0895
DNA internalization-related competence protein ComEC/Rec2; COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004797:IPR004477; KEGG: tit:Thit_0878 DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; SPTR: DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
       0.454
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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