Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_0925Protein of unknown function DUF95 transmembrane; COGs: COG1300 membrane protein; InterPro IPR002798; KEGG: tsi:TSIB_1923 SpoIIM-like stage II sporulation protein M related; PFAM: protein of unknown function DUF95 transmembrane; SPTR: Putative uncharacterized protein; PFAM: Integral membrane protein DUF95. (198 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.741
Toce_0923
KEGG: amt:Amet_3028 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3048).
 
     0.655
Toce_0920
7TM receptor with intracellular metal dependent phosphohydrolase; COGs: COG1480 membrane-associated HD superfamily hydrolase; InterPro IPR003607:IPR006675:IPR011621:IPR006674; KEGG: dau:Daud_2047 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: 7TM receptor with intracellular metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: 7TM-HD extracellular; HD domain; 7TM receptor with intracellular HD hydrolase; [...]
  
    0.576
Toce_2233
YycH family protein; COGs: COG4863 conserved hypothetical protein; InterPro IPR009996; KEGG: amt:Amet_4755 hypothetical protein; PFAM: YycH family protein; SPTR: Putative uncharacterized protein; PFAM: YycH protein.
  
     0.573
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.517
Toce_0922
COGs: COG0818 Diacylglycerol kinase; InterPro IPR000829; KEGG: tpd:Teth39_1366 diacylglycerol kinase; PFAM: diacylglycerol kinase; SPTR: Diacylglycerol kinase; PFAM: Prokaryotic diacylglycerol kinase.
       0.517
Toce_0917
KEGG: dae:Dtox_3072 sporulation protein YqfC; SPTR: Sporulation protein YqfC; PFAM: YabP family; TIGRFAM: sporulation protein YqfC.
     
 0.500
Toce_0919
PhoH family protein; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR004087:IPR018111:IPR003714; KEGG: tte:TTE0970 phosphate starvation-inducible protein PhoH, ATPase; PFAM: PhoH family protein; K Homology, type 1, subgroup; SMART: KH domain protein; SPTR: PhoH family protein; PFAM: KH domain; PhoH-like protein.
       0.500
Toce_0926
CBS domain containing protein; InterPro IPR000644:IPR016842; KEGG: tpd:Teth39_1360 transcriptional regulator; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Transcriptional regulator with CBS sensor domain, DeoR family; PFAM: HTH domain; CBS domain.
       0.500
Toce_0918
Sporulation protein YqfD; InterPro IPR010690; KEGG: tte:TTE0969 stage IV sporulation protein; PFAM: putative stage IV sporulation YqfD; SPTR: Stage IV sporulation protein; TIGRFAM: sporulation protein YqfD; PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD.
  
    0.487
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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