STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_0992KEGG: swo:Swol_1314 hypothetical protein; SPTR: Putative uncharacterized protein. (294 aa)    
Predicted Functional Partners:
Toce_0991
KEGG: swo:Swol_1315 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.762
Toce_0990
KEGG: gwc:GWCH70_2837 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.582
Toce_0989
Hypothetical protein; KEGG: swo:Swol_1076 Ig-like domain-containing protein; SPTR: Surface proteins containing Ig-like domains-like; PFAM: The GLUG motif.
       0.570
Toce_0988
KEGG: gwc:GWCH70_2839 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.554
Toce_0993
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: bcy:Bcer98_1286 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
       0.543
Toce_0994
KEGG: dhd:Dhaf_1452 hypothetical protein; SPTR: Lipoprotein.
       0.497
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.