Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Toce_1000KEGG: drm:Dred_2129 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Terminase-like family. (527 aa)    
Predicted Functional Partners:
Toce_1001
InterPro IPR021145; KEGG: drm:Dred_0374 phage portal protein, SPP1; PFAM: Bacteriophage portal protein, SPP1 Gp6-like; SPTR: Phage portal protein, SPP1; PFAM: Phage portal protein, SPP1 Gp6-like; TIGRFAM: phage portal protein, SPP1 family.
 
    0.896
Toce_1003
KEGG: drm:Dred_2125 Ig domain-containing protein; SPTR: Ig domain protein, group 2 domain protein.
  
    0.686
Toce_0999
KEGG: bcy:Bcer98_1290 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.682
Toce_0982
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: nth:Nther_1227 integrase family protein; PFAM: integrase family protein; SPTR: Integrase family protein; manually curated; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
  
    0.602
Toce_0998
KEGG: swo:Swol_1313 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.462
Toce_0038
SCP-like extracellular; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014258:IPR014044; KEGG: pth:PTH_2171 hypothetical protein; PFAM: SCP-like extracellular; SPTR: Uncharacterized protein; PFAM: Cysteine-rich secretory protein family; TIGRFAM: uncharacterized protein, YkwD family.
   
    0.461
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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