STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1005Hypothetical protein; KEGG: tte:TTE1601 membrane-fusion protein; SPTR: Membrane-fusion protein; TIGRFAM: putative membrane fusion protein. (405 aa)    
Predicted Functional Partners:
Toce_0487
O-antigen polymerase; InterPro IPR019734:IPR013026:IPR007016; KEGG: tte:TTE0644 TPR repeat-containing protein; PFAM: O-antigen polymerase; SPTR: TPR-repeat-containing proteins; PFAM: O-Antigen ligase.
 
  
 0.787
Toce_2167
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: bbe:BBR47_54170 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: Putative uncharacterized protein; PFAM: Outer membrane efflux protein.
  
 
 0.779
Toce_1006
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.774
Toce_1008
Protein of unknown function YGGT; InterPro IPR003425; KEGG: pth:PTH_1825 integral membrane protein; PFAM: protein of unknown function YGGT; SPTR: Putative uncharacterized protein; PFAM: YGGT family.
 
     0.767
sepF
Protein of unknown function DUF552; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
       0.714
Toce_1383
KEGG: tte:TTE1137 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unkown function (DUF1901).
  
     0.708
Toce_2007
KEGG: swo:Swol_2165 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.705
Toce_1373
KEGG: tte:TTE1185 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.637
Toce_2232
InterPro IPR018604; KEGG: tit:Thit_2308 protein of unknown function YycH; PFAM: Protein of unknown function YycH; SPTR: Putative uncharacterized protein; PFAM: YycH protein.
  
     0.609
Toce_1010
KEGG: tte:TTE1595 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.598
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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