STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1036Protein of unknown function DUF322; COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: nth:Nther_1344 protein of unknown function DUF322; PFAM: protein of unknown function DUF322; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF322). (117 aa)    
Predicted Functional Partners:
Toce_1037
DAK2 domain fusion protein YloV; COGs: COG1461 kinase related to dihydroxyacetone kinase; InterPro IPR004007:IPR019986; KEGG: amt:Amet_2771 Dak phosphatase; PFAM: Dak phosphatase; SPTR: Dak phosphatase; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV.
 
  
 0.984
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.778
Toce_1054
degV family protein; COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: nth:Nther_1346 DegV family protein; PFAM: DegV family protein; SPTR: DegV family protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family.
 
    0.695
rpmB
LSU ribosomal protein L28P; InterPro IPR001383; KEGG: dae:Dtox_1163 ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: Ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.658
Toce_0576
degV family protein; COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: afl:Aflv_2160 hypothetical protein; PFAM: DegV family protein; SPTR: Uncharacterized protein conserved in bacteria; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family.
 
    0.599
Toce_1039
InterPro IPR001448:IPR018126; KEGG: nth:Nther_1585 small acid-soluble spore protein alpha/beta type; PFAM: small acid-soluble spore protein alpha/beta type; SPTR: Small acid-soluble spore protein alpha/beta type; PFAM: Small, acid-soluble spore proteins, alpha/beta type.
  
    0.591
Toce_1354
Protein of unknown function DUF965; COGs: COG4472 conserved hypothetical protein; InterPro IPR009309; KEGG: dae:Dtox_2267 protein of unknown function DUF965; PFAM: protein of unknown function DUF965; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF965); Belongs to the UPF0297 family.
  
    0.590
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.543
Toce_1040
Methyltransferase; COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398:IPR002052; KEGG: tit:Thit_1294 methyltransferase; PFAM: conserved hypothetical protein; SPTR: Methyltransferase; TIGRFAM: methyltransferase; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.
  
    0.514
Toce_1064
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
     0.508
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.