Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Toce_1165Peptidase M42 family protein; COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: tpd:Teth39_1849 peptidase M42 family protein; PFAM: peptidase M42 family protein; SPTR: Peptidase M42 family protein; PFAM: M42 glutamyl aminopeptidase. (337 aa)    
Predicted Functional Partners:
Toce_1164
Peptidase M42 family protein; COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: tte:TTE0441 cellulase M-like protein; PFAM: peptidase M42 family protein; SPTR: Cellulase; PFAM: M42 glutamyl aminopeptidase.
 
    
0.814
Toce_1166
Cellulase; COGs: COG1363 Cellulase M and related protein; InterPro IPR008007; KEGG: aoe:Clos_1557 peptidase M42 family protein; PFAM: peptidase M42 family protein; PRIAM: Cellulase; SPTR: Peptidase M42 family protein; PFAM: M42 glutamyl aminopeptidase.
 
    
0.804
Toce_1167
KEGG: bfu:BC1G_04623 hypothetical protein; SPTR: Predicted protein.
       0.510
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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