Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1183KEGG: hor:Hore_11590 hypothetical protein; SPTR: Putative uncharacterized protein. (201 aa)    
Predicted Functional Partners:
Toce_1184
InterPro IPR002917; KEGG: amt:Amet_2539 GTP-binding protein, HSR1-related; PFAM: GTP-binding protein HSR1-related; SPTR: GTP-binding protein, HSR1-related; PFAM: GTPase of unknown function.
       0.795
Toce_1185
Stage V sporulation protein K; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593:IPR000641:IPR003959:IPR014232; KEGG: drm:Dred_1880 ATPase central domain-containing protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: AAA ATPase, central domain protein; TIGRFAM: stage V sporulation protein K; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: probable Rubsico expression protein CbbX; stage V sporulation protein K.
       0.591
Toce_1182
COGs: COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance; InterPro IPR009651; KEGG: cth:Cthe_0794 aluminium resistance protein; PFAM: Aluminium resistance family protein; SPTR: Aluminium resistance family protein; PFAM: Aluminium resistance protein.
       0.526
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
       0.421
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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