STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1266KEGG: rca:Rcas_4064 transposase IS4 family protein; SPTR: Transposase IS4 family protein. (62 aa)    
Predicted Functional Partners:
Toce_1265
InterPro IPR009923; KEGG: nth:Nther_1660 protein of unknown function DUF1458; PFAM: protein of unknown function DUF1458; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1458).
       0.773
Toce_1264
Stage V sporulation protein AC; InterPro IPR014203:IPR005562; KEGG: cdl:CDR20291_0702 stage V sporulation protein AC; PFAM: SpoVA protein; SPTR: Putative uncharacterized protein; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
       0.746
Toce_1263
InterPro IPR010894; KEGG: amt:Amet_2220 stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; SPTR: Stage V sporulation AD family protein; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
       0.741
Toce_1262
Stage V sporulation protein AE; InterPro IPR014204:IPR005562; KEGG: csc:Csac_0090 SpoVA protein; PFAM: SpoVA protein; SPTR: SpoVA protein; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE.
       0.680
Toce_1261
KEGG: blo:BL1632 hypothetical protein; SPTR: MFS transporter.
       0.666
Toce_1267
RNA polymerase, sigma subunit, RpoX/SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.545
Toce_1258
CoA-substrate-specific enzyme activase; COGs: COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain); InterPro IPR008275:IPR002731; KEGG: mta:Moth_1149 CoA enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; SPTR: CoA enzyme activase; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase, putative.
       0.508
Toce_1259
COGs: COG3581 conserved hypothetical protein; KEGG: hmo:HM1_0328 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: CoA enzyme activase uncharacterised domain (DUF2229).
       0.508
Toce_1260
Protein of unknown function DUF2229, CoA enzyme activase; COGs: COG3580 conserved hypothetical protein; InterPro IPR018709; KEGG: amt:Amet_1169 hypothetical protein; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; SPTR: Putative uncharacterized protein; PFAM: CoA enzyme activase uncharacterised domain (DUF2229).
       0.508
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
       0.507
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.