STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1280KEGG: hau:Haur_0657 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: P22 coat protein - gene protein 5. (276 aa)    
Predicted Functional Partners:
Toce_1281
KEGG: cbb:CLD_2446 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.734
Toce_1282
InterPro IPR006528; KEGG: cbi:CLJ_B1815 phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; SPTR: Putative phage head morphogenesis protein, SPP1 gp7 family; TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family.
 
     0.695
Toce_1283
InterPro IPR006428:IPR021145; KEGG: cbl:CLK_1336 SPP1 family phage portal protein; PFAM: Bacteriophage portal protein, SPP1 Gp6-like; SPTR: Phage portal protein, SPP1 family; TIGRFAM: phage portal protein, SPP1 family; PFAM: Phage portal protein, SPP1 Gp6-like; TIGRFAM: phage portal protein, SPP1 family.
 
     0.673
Toce_1284
Phage uncharacterized protein; InterPro IPR006517; KEGG: cbb:CLD_2442 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: phage uncharacterized protein.
 
     0.673
Toce_1279
Transposase IS4 family protein; COGs: COG3666 Transposase and inactivated derivatives; InterPro IPR002559; KEGG: tte:TTE2646 transposase; PFAM: transposase IS4 family protein; SPTR: Transposase; PFAM: Transposase DDE domain; Transposase domain (DUF772).
       0.500
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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