Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1329COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883:IPR003494; KEGG: mxa:MXAN_5776 type IV pilus biogenesis protein PilM; PFAM: cell division protein FtsA; SPTR: Type IV pilus biogenesis protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM. (339 aa)    
Predicted Functional Partners:
Toce_1328
InterPro IPR007813; KEGG: mta:Moth_1544 fimbrial assembly; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly; PFAM: Fimbrial assembly protein (PilN).
  
 
 0.964
Toce_1335
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076:IPR003004; KEGG: tte:TTE1264 general secretory pathway protein F; PFAM: Type II secretion system F domain; SPTR: General secretory pathway protein F; PFAM: Bacterial type II secretion system protein F domain.
 
 
 0.913
Toce_1327
KEGG: tpd:Teth39_1079 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Pilus assembly protein, PilO.
  
 
 0.879
Toce_1921
InterPro IPR007813; KEGG: mta:Moth_1544 fimbrial assembly; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly; PFAM: Fimbrial assembly protein (PilN).
  
 
 0.856
aroK
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the shikimate kinase family.
     
 0.854
Toce_1336
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831:IPR001482; KEGG: amt:Amet_3482 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E.
 
 
 0.842
Toce_1928
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR001992:IPR003004:IPR018076; KEGG: mta:Moth_1552 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
 
 0.824
Toce_1330
Late competence development protein ComFB; InterPro IPR019657; KEGG: cth:Cthe_0851 hypothetical protein; PFAM: Late competence development protein ComFB; SPTR: Putative uncharacterized protein; PFAM: Late competence development protein ComFB.
       0.792
Toce_1325
Peptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000587:IPR000994; KEGG: drm:Dred_1051 peptidase M24; PFAM: peptidase M24; creatinase; SPTR: Peptidase M24; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
       0.791
Toce_1333
InterPro IPR012902; KEGG: dae:Dtox_2705 hypothetical protein; SPTR: N-terminal methylation protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.782
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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