Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1354Protein of unknown function DUF965; COGs: COG4472 conserved hypothetical protein; InterPro IPR009309; KEGG: dae:Dtox_2267 protein of unknown function DUF965; PFAM: protein of unknown function DUF965; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF965); Belongs to the UPF0297 family. (86 aa)    
Predicted Functional Partners:
Toce_1352
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.949
Toce_1353
COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395:IPR017896:IPR017900:IPR020471; KEGG: cth:Cthe_0152 aldo/keto reductase; PFAM: aldo/keto reductase; SPTR: Aldo/keto reductase; PFAM: Aldo/keto reductase family.
       0.791
Toce_0934
Protein of unknown function DUF633; COGs: COG2384 SAM-dependent methyltransferase; InterPro IPR006901; KEGG: ckr:CKR_0857 hypothetical protein; PFAM: protein of unknown function DUF633; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF633).
  
     0.752
Toce_2258
Protein of unknown function DUF951; COGs: COG4481 conserved hypothetical protein; InterPro IPR009296; KEGG: cth:Cthe_2512 hypothetical protein; PFAM: protein of unknown function DUF951; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF951).
  
     0.730
Toce_0102
COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR014249:IPR002797; KEGG: amt:Amet_0163 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B.
  
     0.724
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.724
Toce_1064
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.715
Toce_1017
COGs: COG1293 RNA-binding protein homologous to eukaryotic snRNP; InterPro IPR008616:IPR008532; KEGG: tte:TTE1517 RNA-binding protein snRNP; PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; SPTR: Predicted RNA-binding protein homologous to eukaryotic snRNP; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA).
  
     0.706
polC
DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.683
Toce_1351
Protein of unknown function DUF1292; InterPro IPR009711; KEGG: tte:TTE1251 hypothetical protein; PFAM: protein of unknown function DUF1292; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1292); Belongs to the UPF0473 family.
  
  
 0.664
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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