STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sfsACOGs: COG1489 DNA-binding protein stimulates sugar fermentation; InterPro IPR005224; KEGG: cbi:CLJ_B0041 sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; SPTR: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein; TIGRFAM: sugar fermentation stimulation protein; Belongs to the SfsA family. (229 aa)    
Predicted Functional Partners:
Toce_1483
KEGG: hor:Hore_09920 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.757
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
      0.721
Toce_1481
Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119; KEGG: dhd:Dhaf_1115 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain.
     
 0.554
Toce_1484
Methylaspartate mutase; InterPro IPR006230; KEGG: amt:Amet_2372 methylaspartate mutase; SPTR: Methylaspartate mutase; TIGRFAM: conserved hypothetical protein.
       0.531
Toce_1485
D-ornithine 4,5-aminomutase E subunit; COGs: COG5012 cobalamin binding protein; InterPro IPR015130:IPR006158; KEGG: tte:TTE1238 methylmalonyl-CoA mutase C-terminal domain-containing protein; PFAM: cobalamin B12-binding domain protein; D-Lysine 56-aminomutase alpha subunit; SPTR: Methylmalonyl-CoA mutase, C-terminal domain/subunit (Cobalamin-binding); PFAM: D-Lysine 5,6-aminomutase alpha subunit; B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain.
       0.506
Toce_1486
D-ornithine 4,5-aminomutase S subunit; KEGG: hor:Hore_21080 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.506
Toce_1487
Pyridoxal-5'-phosphate-dependent protein beta subunit; COGs: COG0031 Cysteine synthase; InterPro IPR001926; KEGG: tte:TTE1236 threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: Threonine synthase; PFAM: Pyridoxal-phosphate dependent enzyme.
       0.496
Toce_1488
KEGG: taf:THA_1161 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.496
Toce_1489
Dihydrodipicolinate reductase; COGs: COG3804 conserved hypothetical protein related to dihydrodipicolinate reductase; InterPro IPR000846; KEGG: tte:TTE1234 hypothetical protein; PFAM: dihydrodipicolinate reductase; SPTR: Putative uncharacterized protein; PFAM: Dihydrodipicolinate reductase, N-terminus.
       0.496
Toce_1480
Export-related chaperone CsaA; COGs: COG0073 EMAP domain; InterPro IPR008231:IPR002547; KEGG: bmq:BMQ_pBM50063 export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; SPTR: Export-related chaperone CsaA; TIGRFAM: export-related chaperone CsaA; PFAM: Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; export-related chaperone CsaA.
       0.486
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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