STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Cooccurrence
Coexpression
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[Homology]
Score
Toce_1528COGs: COG0793 Periplasmic protease; InterPro IPR004447:IPR001478:IPR005151:IPR002477; KEGG: tte:TTE2617 periplasmic protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; Peptidoglycan-binding domain 1 protein; PRIAM: C-terminal processing peptidase; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; SPTR: Carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: Putative peptidoglycan binding domain; Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family. (473 aa)    
Predicted Functional Partners:
Toce_1588
COGs: COG0438 Glycosyltransferase; InterProIPR001296:IPR013216:IPR001173:IPR019734:IPR 013026:IPR000276; KEGG: tnp:Tnap_0554 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; SMART: Tetratricopeptide repeat; SPTR: Glycosyl transferase family 2; PFAM: Methyltransferase domain; Glycosyl transferases group 1; Glycosyl transferase family 2.
  
 
 0.869
Toce_1529
2-polyprenylphenol 6-hydroxylase; COGs: COG0661 unusual protein kinase; InterPro IPR010232:IPR004147:IPR002575; KEGG: gur:Gura_1388 hypothetical protein; PFAM: ABC-1 domain protein; aminoglycoside phosphotransferase; SPTR: 2-octaprenylphenol hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: Phosphotransferase enzyme family; ABC1 family; TIGRFAM: 2-polyprenylphenol 6-hydroxylase.
       0.686
Toce_1250
Membrane-associated zinc metalloprotease; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR004387:IPR008915:IPR001478; KEGG: tte:TTE1401 membrane-associated Zn-dependent protease 1; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; SPTR: Predicted membrane-associated Zn-dependent protease 1; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP.
 
  
 0.533
Toce_0487
O-antigen polymerase; InterPro IPR019734:IPR013026:IPR007016; KEGG: tte:TTE0644 TPR repeat-containing protein; PFAM: O-antigen polymerase; SPTR: TPR-repeat-containing proteins; PFAM: O-Antigen ligase.
  
 
 0.451
Toce_1527
Sodium ion-translocating decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD).
       0.444
Toce_1526
KEGG: smc:SmuNN2025_1005 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Oxaloacetate decarboxylase, gamma chain.
       0.422
Toce_0197
S-layer domain protein; InterPro IPR001119; KEGG: tit:Thit_0105 S-layer domain protein; PFAM: S-layer domain protein; SPTR: S-layer domain protein; PFAM: S-layer homology domain.
    
 
 0.418
Toce_0616
NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: tle:Tlet_0253 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: NLP/P60 protein; PFAM: NlpC/P60 family; Bacterial SH3 domain.
    
 
 0.418
Toce_0287
TPR repeat-containing protein; InterPro IPR001440:IPR019734:IPR013026; KEGG: dae:Dtox_2626 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
  
 
 0.417
Toce_1531
C_GCAxxG_C_C family protein; InterPro IPR010181:IPR000834; KEGG: amt:Amet_3720 C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; SPTR: C_GCAxxG_C_C family protein; TIGRFAM: C_GCAxxG_C_C family protein; PFAM: Putative redox-active protein (C_GCAxxG_C_C); TIGRFAM: C_GCAxxG_C_C family probable redox protein.
       0.414
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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