STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1535COGs: COG1962 Tetrahydromethanopterin S-methyltransferase subunit H; InterPro IPR002856; KEGG: mch:Mchl_5727 tetrahydromethanopterin S-methyltransferase subunit H; PFAM: Tetrahydromethanopterin S-methyltransferase MtrH subunit; PRIAM: Tetrahydromethanopterin S-methyltransferase; SPTR: CmuB; PFAM: Tetrahydromethanopterin S-methyltransferase MtrH subunit; TIGRFAM: N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit H. (298 aa)    
Predicted Functional Partners:
Toce_1534
KEGG: mch:Mchl_5728 hypothetical protein; SPTR: Methyltransferase CmuC; PFAM: Uroporphyrinogen decarboxylase (URO-D).
 
   
 0.941
Toce_0810
COGs: COG2069 CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein); InterPro IPR016041; KEGG: amt:Amet_2025 acetyl-CoA decarbonylase/synthase complex subunit delta; PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; SPTR: CO dehydrogenase/acetyl-CoA synthase delta subunit; PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit.
  
  
  0.914
Toce_0811
COGs: COG1456 CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein); InterPro IPR016218:IPR007202:IPR016041; KEGG: amt:Amet_2026 acetyl-CoA decarbonylase/synthase complex subunit gamma; PFAM: CO dehydrogenase/acetyl-CoA synthase delta subunit, TIM barrel; Fe-S cluster domain protein; SPTR: CO dehydrogenase/acetyl-CoA synthase delta subunit; PFAM: Putative Fe-S cluster; CO dehydrogenase/acetyl-CoA synthase delta subunit.
  
  
  0.914
Toce_0706
Methyltransferase cognate corrinoid protein; COGs: COG5012 cobalamin binding protein; InterPro IPR006158:IPR003759:IPR012741; KEGG: swo:Swol_0418 cobalamin-dependent methionine synthase, B12-binding; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; SPTR: Dimethylamine corrinoid protein; TIGRFAM: methyltransferase cognate corrinoid protein; PFAM: B12 binding domain; TIGRFAM: methyltransferase cognate corrinoid proteins, Methanosarcina family.
    
 0.904
Toce_1533
Methyltransferase MtaA/CmuA family; COGs: COG5012 cobalamin binding protein; InterPro IPR006360:IPR000257:IPR003759:IPR006158; KEGG: mch:Mchl_5697 methyltransferase MtaA/CmuA family; PFAM: cobalamin B12-binding domain protein; Methionine synthase B12-binding module cap domain protein; Uroporphyrinogen decarboxylase (URO-D); SPTR: Methyltransferase/corrinoid CmuA; TIGRFAM: methyltransferase MtaA/CmuA family; PFAM: Uroporphyrinogen decarboxylase (URO-D); B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain; methyltransferase, MtaA/CmuA family; Belongs to the uroporphyr [...]
 
   
 0.894
Toce_1536
HPP family protein; COGs: COG3448 CBS-domain-containing membrane protein; InterPro IPR007065; KEGG: drm:Dred_2943 HPP family protein+B94; PFAM: HPP family protein; SPTR: HPP family protein+B94; PFAM: HPP family.
 
     0.853
Toce_0791
KEGG: amt:Amet_2095 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uroporphyrinogen decarboxylase (URO-D).
 
   
 0.522
Toce_1532
Hypothetical protein; KEGG: sfu:Sfum_2544 FmdB family regulatory protein; SPTR: Putative transporter; PFAM: Zinc ribbon domain.
       0.510
Toce_0788
KEGG: dhd:Dhaf_2572 protein of unknown function DUF1638; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1638).
 
     0.507
Toce_0626
COGs: COG1751 conserved hypothetical protein; InterPro IPR005829:IPR015074; KEGG: csc:Csac_1944 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Pyruvate kinase, alpha/beta domain.
  
     0.499
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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