Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1574Hypothetical protein; KEGG: tet:TTHERM_00702270 Beige/BEACH domain containing protein; SPTR: Beige/BEACH domain containing protein. (272 aa)    
Predicted Functional Partners:
Toce_1575
InterPro IPR006935; KEGG: tal:Thal_1286 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; SPTR: Type III restriction protein res subunit; PFAM: Type III restriction enzyme, res subunit.
       0.642
Toce_1576
DNA methylase N-4/N-6 domain protein; COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941:IPR002295:IPR002052:IPR016059; KEGG: hth:HTH_1616 adenine-specific DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: Adenine-specific DNA methylase; PFAM: DNA methylase.
       0.642
Toce_1573
KEGG: csc:Csac_2372 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.438
Toce_1577
KEGG: pth:PTH_2094 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.403
Toce_1578
Flagellar protein FliS; COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: amt:Amet_0786 flagellar protein FliS; PFAM: flagellar protein FliS; SPTR: Flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
       0.403
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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