STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1575InterPro IPR006935; KEGG: tal:Thal_1286 type III restriction protein res subunit; PFAM: type III restriction protein res subunit; SPTR: Type III restriction protein res subunit; PFAM: Type III restriction enzyme, res subunit. (979 aa)    
Predicted Functional Partners:
Toce_1576
DNA methylase N-4/N-6 domain protein; COGs: COG2189 Adenine specific DNA methylase Mod; InterPro IPR002941:IPR002295:IPR002052:IPR016059; KEGG: hth:HTH_1616 adenine-specific DNA methylase; PFAM: DNA methylase N-4/N-6 domain protein; SPTR: Adenine-specific DNA methylase; PFAM: DNA methylase.
 
   
 0.955
Toce_1574
Hypothetical protein; KEGG: tet:TTHERM_00702270 Beige/BEACH domain containing protein; SPTR: Beige/BEACH domain containing protein.
       0.642
Toce_1577
KEGG: pth:PTH_2094 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.472
Toce_1578
Flagellar protein FliS; COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: amt:Amet_0786 flagellar protein FliS; PFAM: flagellar protein FliS; SPTR: Flagellar protein FliS; TIGRFAM: flagellar protein FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
       0.472
Toce_1579
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
       0.455
Toce_1580
InterPro IPR005186; KEGG: csc:Csac_1698 flagellar protein FlaG protein; PFAM: flagellar protein FlaG protein; SPTR: Flagellar protein FlaG protein; PFAM: FlaG protein.
       0.406
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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