Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1607TRAP transporter solute receptor, TAXI family; COGs: COG2358 TRAP-type uncharacterized transport system periplasmic component; InterPro IPR011852:IPR001638; KEGG: drm:Dred_3213 TRAP transporter solute receptor TAXI family protein; SMART: extracellular solute-binding protein family 3; SPTR: TRAP transporter; TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family. (320 aa)    
Predicted Functional Partners:
Toce_1609
TRAP transporter, 4TM/12TM fusion protein; COGs: COG4666 TRAP-type uncharacterized transport system fused permease components; InterPro IPR011853:IPR010656; KEGG: drm:Dred_3211 TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: FxsA cytoplasmic membrane protein; DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein.
  
 0.993
Toce_0461
Sodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.
 
    0.898
Toce_1608
Domain of unknown function DUF1850; COGs: COG4729 conserved hypothetical protein; InterPro IPR015001; KEGG: drm:Dred_3212 hypothetical protein; PFAM: Domain of unknown function DUF1850; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1850).
 
    0.884
Toce_1605
Protein of unknown function DUF477; COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: ate:Athe_0034 protein of unknown function DUF477; PFAM: protein of unknown function DUF477; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF477).
       0.471
Toce_1606
LemA family protein; COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: tit:Thit_0327 LemA family protein; PFAM: LemA family protein; SPTR: LemA family protein; PFAM: LemA family.
       0.471
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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