STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1618Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro IPR010187:IPR001986; KEGG: cpo:COPRO5265_0224 glycine reductase complex component B subunit gamma (selenoprotein PB gamma); SPTR: Glycine reductase complex component B subunit gamma (Selenoprotein PB gamma); TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; PFAM: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. (349 aa)    
Predicted Functional Partners:
Toce_1617
Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro IPR010187; KEGG: cpo:COPRO5265_0224 glycine reductase complex component B subunit gamma (selenoprotein PB gamma); SPTR: Glycine reductase complex component B subunit gamma (Selenoprotein PB gamma); TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; TIGRFAM: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family.
     0.994
Toce_1619
InterPro IPR006812; KEGG: cpo:COPRO5265_0223 glycine/sarcosine/betaine reductase complex component A1 (selenoprotein PA 1) (thioredoxinreductase complex A 1); PFAM: glycine reductase complex selenoprotein A; SPTR: Glycine/sarcosine/betaine reductase complex component A1 (Selenoprotein PA 1) (Thioredoxinreductase complex A 1); PFAM: Glycine reductase complex selenoprotein A.
 
   
 0.978
Toce_1621
InterPro IPR015417:IPR016585; KEGG: tte:TTE1879 GrdE proprotein; PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; SPTR: GrdE proprotein; PFAM: Glycine/sarcosine/betaine reductase component B subunits.
 
   
 0.964
Toce_1615
Fatty acid synthesis plsX protein; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
 
   
 0.958
Toce_1616
InterPro IPR013751; KEGG: tte:TTE1875 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; SPTR: 3-oxoacyl-(Acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III.
 
   
 0.958
Toce_1620
InterPro IPR006812; KEGG: nth:Nther_0473 glycine/sarcosine/betaine reductase complex protein A; PFAM: glycine reductase complex selenoprotein A; SPTR: Betaine reductase; PFAM: Glycine reductase complex selenoprotein A.
 
     0.949
Toce_1622
COGs: COG3118 Thioredoxin domain-containing protein; InterPro IPR013766:IPR017936; KEGG: tte:TTE1880 thiol-disulfide isomerase and thioredoxins; PFAM: Thioredoxin domain; SPTR: Thiol-disulfide isomerase and thioredoxins; PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family.
 
   
 0.812
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
  0.499
Toce_0155
COGs: COG0492 Thioredoxin reductase; InterPro IPR005982:IPR013027:IPR000103:IPR008255; KEGG: pth:PTH_1417 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase.
     
 0.485
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
      
 0.414
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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