Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1696Glycosidase related protein; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: swo:Swol_1919 glycosylase-like protein; PFAM: glycosidase related protein; SPTR: Glycosylase-like protein; PFAM: Domain of unknown function (DUF377). (1182 aa)    
Predicted Functional Partners:
Toce_1697
KEGG: swo:Swol_1917 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.948
Toce_1698
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: swo:Swol_1916 glycosyltransferase; PFAM: glycosyl transferase group 1; SPTR: Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
  
 0.947
Toce_1367
Von Willebrand factor type A; COGs: COG1240 Mg-chelatase subunit ChlD; InterPro IPR002035; KEGG: nth:Nther_2026 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Von Willebrand factor, type A; PFAM: von Willebrand factor type A domain.
  
     0.689
Toce_1595
KEGG: amt:Amet_0729 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.624
Toce_2007
KEGG: swo:Swol_2165 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.552
Toce_1368
COGs: COG1239 Mg-chelatase subunit ChlI; InterPro IPR003593; KEGG: sth:STH2441 putative chelatase; PRIAM: Magnesium chelatase; SMART: AAA ATPase; SPTR: Putative chelatase.
  
     0.550
Toce_0216
Rubrerythrin; InterPro IPR003251:IPR009040; KEGG: tye:THEYE_A1650 rubrerythrin subfamily; PFAM: Rubrerythrin; SPTR: Rubrerythrin subfamily; PFAM: Rubrerythrin.
  
     0.542
Toce_0682
InterPro IPR002934; KEGG: rrs:RoseRS_4091 DNA polymerase beta subunit; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase, beta domain protein region; PFAM: Nucleotidyltransferase domain.
  
     0.518
Toce_1213
SMC domain protein; COGs: COG0419 ATPase involved in DNA repair; InterPro IPR003395; KEGG: cth:Cthe_0944 SMC protein-like protein; PFAM: SMC domain protein; SPTR: SMC domain protein.
  
     0.513
Toce_1100
MgtE intracellular region; InterPro IPR006668; KEGG: tte:TTE1437 hypothetical protein; PFAM: MgtE intracellular region; SPTR: Putative uncharacterized protein; PFAM: MgtE intracellular N domain.
  
     0.505
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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