STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1706KEGG: drm:Dred_3109 hypothetical protein; SPTR: Putative uncharacterized protein. (644 aa)    
Predicted Functional Partners:
Toce_1705
Polysaccharide pyruvyl transferase CsaB; COGs: COG2327 conserved hypothetical protein; InterPro IPR019896; KEGG: drm:Dred_3108 polysaccharide pyruvyl transferase; SPTR: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: Polysaccharide pyruvyl transferase; TIGRFAM: polysaccharide pyruvyl transferase CsaB.
 
  
 0.954
Toce_1704
Glycosyl transferase, WecB/TagA/CpsF family; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
 
   
 0.805
Toce_1703
Protein of unknown function DUF2179; COGs: COG1284 conserved hypothetical protein; InterPro IPR003740:IPR019264; KEGG: hor:Hore_16380 hypothetical protein; PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; SPTR: Uncharacterized conserved protein; PFAM: Uncharacterized BCR, YitT family COG1284; Uncharacterized protein conserved in bacteria (DUF2179).
       0.703
Toce_1707
KEGG: pth:PTH_2777 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.669
Toce_0165
InterPro IPR012854; KEGG: tit:Thit_2257 copper amine oxidase domain protein; PFAM: copper amine oxidase domain protein; SPTR: Copper amine oxidase domain protein; PFAM: Copper amine oxidase N-terminal domain; Glycosyl hydrolase family 26; Belongs to the glycosyl hydrolase 26 family.
 
     0.661
Toce_1702
COGs: COG3959 Transketolase N-terminal subunit; InterPro IPR005474; KEGG: dau:Daud_2078 transketolase domain-containing protein; PFAM: Transketolase domain protein; SPTR: Transketolase domain protein; PFAM: Transketolase, thiamine diphosphate binding domain.
       0.590
Toce_1701
COGs: COG3958 Transketolase C-terminal subunit; InterPro IPR005475:IPR005476; KEGG: tex:Teth514_0969 transketolase, central region; PFAM: Transketolase central region; Transketolase domain protein; SPTR: Transketolase, central region; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.
       0.515
prfB
Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.511
Toce_2237
InterPro IPR020390; KEGG: drm:Dred_1679 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2619).
  
     0.490
Toce_2231
InterPro IPR012854; KEGG: dae:Dtox_3690 copper amine oxidase domain protein; PFAM: copper amine oxidase domain protein; SPTR: Copper amine oxidase domain protein; PFAM: Copper amine oxidase N-terminal domain.
  
     0.467
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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