Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1736Radical SAM domain protein; COGs: COG1533 DNA repair photolyase; InterPro IPR007197; KEGG: drm:Dred_0691 spore photoproduct lyase; PFAM: Radical SAM domain protein; SPTR: Radical SAM domain protein; TIGRFAM: spore photoproduct lyase. (341 aa)    
Predicted Functional Partners:
Toce_1610
Sporulation protein YtaF; Probably functions as a manganese efflux pump.
  
     0.531
rtcB
Protein of unknown function UPF0027; COGs: COG1690 conserved hypothetical protein; InterPro IPR001233; KEGG: tte:TTE0709 hypothetical protein; PFAM: protein of unknown function UPF0027; SPTR: Putative uncharacterized protein RtcB; PFAM: Uncharacterized protein family UPF0027; Belongs to the RtcB family.
       0.521
Toce_0726
COGs: COG3546 Mn-containing catalase; InterPro IPR007760; KEGG: hmo:HM1_1323 manganese-containing, non-heme catalase; PFAM: manganese containing catalase; SPTR: Manganese-containing, non-heme catalase; PFAM: Manganese containing catalase.
  
     0.463
Toce_0009
KEGG: pth:PTH_1732 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.423
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.