STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1739Protein of unknown function DUF990; COGs: COG4587 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: pjd:Pjdr2_3967 protein of unknown function DUF990; PFAM: protein of unknown function DUF990; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF990). (266 aa)    
Predicted Functional Partners:
Toce_1740
ABC transporter related protein; COGs: COG4586 ABC-type uncharacterized transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: sth:STH1197 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter ATP-binding protein; PFAM: ABC transporter.
 
  
 0.975
Toce_1738
Protein of unknown function DUF990; COGs: COG3694 ABC-type uncharacterized transport system permease component; InterPro IPR010390; KEGG: sth:STH1199 hypothetical protein; PFAM: protein of unknown function DUF990; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF990).
 
  
 0.967
Toce_1737
COGs: COG0388 amidohydrolase; InterPro IPR003010:IPR001110; KEGG: gym:GYMC10_2272 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; SPTR: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; PFAM: Carbon-nitrogen hydrolase.
       0.658
Toce_0762
NUDIX hydrolase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR020084:IPR000086; KEGG: tte:TTE2249 NTP pyrophosphohydrolase including oxidative damage repair enzyme; PFAM: NUDIX hydrolase; SPTR: NTP pyrophosphohydrolases including oxidative damage repair enzymes; PFAM: NUDIX domain.
  
     0.519
Toce_0330
Peptidase M56 BlaR1; COGs: COG4219 Antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component; InterPro IPR008756; KEGG: dhd:Dhaf_2876 peptidase M56 BlaR1; PFAM: peptidase M56 BlaR1; SPTR: Peptidase M56 BlaR1; PFAM: BlaR1 peptidase M56.
  
     0.517
Toce_1741
Alpha amylase catalytic region; COGs: COG0366 Glycosidase; InterPro IPR006047:IPR006589; KEGG: ate:Athe_0165 alpha amylase catalytic region; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; SPTR: Alpha amylase catalytic region; PFAM: Alpha amylase, catalytic domain.
       0.487
Toce_2049
Hypothetical protein; KEGG: cth:Cthe_2522 membrane associated protein; SPTR: Putative uncharacterized protein.
  
     0.447
Toce_0878
ErfK/YbiS/YcfS/YnhG family protein; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: cbi:CLJ_B0018 ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain.
  
     0.442
Toce_0875
KEGG: tte:TTE2401 hypothetical protein; SPTR: Putative transmembrane anti-sigma factor; PFAM: Predicted integral membrane protein (DUF2275).
  
     0.416
Toce_1888
S-layer domain protein; InterPro IPR005075:IPR001119; KEGG: dsy:DSY4050 hypothetical protein; PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; SPTR: Putative uncharacterized protein; PFAM: S-layer homology domain; Peptidase propeptide and YPEB domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type.
  
     0.409
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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