STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1784Lipoprotein LpqB, GerMN domain protein; COGs: COG5401 Spore germination protein; InterPro IPR019606; KEGG: aoe:Clos_0556 hypothetical protein; PFAM: Lipoprotein LpqB, GerMN domain; SPTR: Putative uncharacterized protein; PFAM: Sporulation and spore germination. (333 aa)    
Predicted Functional Partners:
Toce_1321
InterPro IPR014198; KEGG: drm:Dred_1057 stage III sporulation protein SpoAB; PFAM: Sporulation stage III protein AB; SPTR: Stage III sporulation protein AB; TIGRFAM: stage III sporulation protein AB; PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
  
    0.783
Toce_1782
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
 
     0.755
Toce_1317
InterPro IPR014245; KEGG: amt:Amet_2497 sporulation stage III, protein AF; PFAM: Sporulation stage III protein AF; SPTR: Sporulation stage III, protein AF; TIGRFAM: stage III sporulation protein AF; PFAM: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF.
  
    0.738
Toce_1318
InterPro IPR014194; KEGG: dae:Dtox_2607 stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; SPTR: Stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
    0.727
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
    0.723
Toce_1272
Stage II sporulation protein M; InterPro IPR014196:IPR002798; KEGG: aoe:Clos_1594 sporulation stage II protein M; PFAM: protein of unknown function DUF95 transmembrane; SPTR: Sporulation stage II protein M; TIGRFAM: stage II sporulation protein M; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
     0.707
Toce_2142
pro-sigmaK processing inhibitor BofA; InterPro IPR010001; KEGG: amt:Amet_4774 sigmaK-factor processing regulatory BofA; PFAM: sigmaK-factor processing regulatory BofA; SPTR: SigmaK-factor processing regulatory BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: SigmaK-factor processing regulatory protein BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA.
  
     0.699
Toce_0474
KEGG: amt:Amet_0695 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.692
Toce_1781
Phosphodiesterase, MJ0936 family; COGs: COG0622 phosphoesterase; InterPro IPR000979:IPR004843; KEGG: dae:Dtox_3620 phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; SPTR: Phosphodiesterase, MJ0936 family; TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: phosphoesterase, MJ0936 family.
       0.688
Toce_0917
KEGG: dae:Dtox_3072 sporulation protein YqfC; SPTR: Sporulation protein YqfC; PFAM: YabP family; TIGRFAM: sporulation protein YqfC.
  
     0.651
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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