Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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Toce_1788COGs: COG1757 Na+/H+ antiporter; InterPro IPR018461; KEGG: drm:Dred_1645 Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; SPTR: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter family. (562 aa)    
Predicted Functional Partners:
Toce_0361
Sodium:neurotransmitter symporter; COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: amt:Amet_0580 sodium:neurotransmitter symporter; PFAM: sodium:neurotransmitter symporter; SPTR: Transporter; PFAM: Sodium:neurotransmitter symporter family.
 
   
 0.477
rex-2
CoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
       0.461
Toce_1562
Sodium:neurotransmitter symporter; COGs: COG0733 Na+-dependent transporter of the SNF family; InterPro IPR000175; KEGG: tit:Thit_2327 sodium:neurotransmitter symporter; PFAM: sodium:neurotransmitter symporter; SPTR: Sodium:neurotransmitter symporter; PFAM: Sodium:neurotransmitter symporter family; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
 
   
 0.416
Toce_1843
Na+/solute symporter; COGs: COG4145 Na+/panthothenate symporter; InterPro IPR001734; KEGG: amt:Amet_2980 Na+/solute symporter; PFAM: Na+/solute symporter; SPTR: Na+/solute symporter; PFAM: Sodium:solute symporter family; TIGRFAM: SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.414
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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