Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1814KEGG: chy:CHY_0293 PilT domain-containing protein; SPTR: PIN domain protein. (166 aa)    
Predicted Functional Partners:
Toce_1813
Protein of unknown function DUF955; COGs: COG2856 Zn peptidase; InterPro IPR010359; KEGG: chy:CHY_0294 hypothetical protein; PFAM: protein of unknown function DUF955; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF955).
    0.979
Toce_1624
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.743
Toce_2076
GCN5-related N-acetyltransferase; InterPro IPR000182; KEGG: chy:CHY_1870 acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family.
 
     0.441
Toce_0527
CRISPR-associated RAMP protein, Csm4 family; COGs: COG1567 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005510:IPR005537; KEGG: tme:Tmel_1673 CRISPR-associated RAMP Csm4 family protein; PFAM: protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Csm4 family; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR-associated RAMP protein, Csm4 family.
 
     0.408
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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