Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1837KEGG: aoe:Clos_0434 hypothetical protein; SPTR: Putative uncharacterized protein. (108 aa)    
Predicted Functional Partners:
Toce_0459
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR005467:IPR003594:IPR004358; KEGG: cbe:Cbei_4175 signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; SPTR: Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.638
Toce_1836
Succinate CoA transferase; COGs: COG0427 Acetyl-CoA hydrolase; InterPro IPR017821:IPR003702; KEGG: aoe:Clos_0435 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase; PRIAM: Acetyl-CoA hydrolase; SPTR: Butyryl-CoA : acetate coenzyem A transferase; TIGRFAM: succinate CoA transferase; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; TIGRFAM: succinate CoA transferases.
 
     0.637
Toce_1835
YidE/YbjL duplication; COGs: COG2985 permease; InterPro IPR006512; KEGG: tai:Taci_0300 YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; SPTR: YidE/YbjL duplication; TIGRFAM: YidE/YbjL duplication; PFAM: Predicted Permease Membrane Region; TIGRFAM: YidE/YbjL duplication.
 
     0.605
Toce_1838
Alanine racemase domain protein; COGs: COG3616 amino acid aldolase or racemase; InterPro IPR001608; KEGG: cdl:CDR20291_2708 putative amino acid racemase; PFAM: alanine racemase domain protein; SPTR: Putative amino acid racemase; PFAM: Alanine racemase, N-terminal domain.
       0.563
Toce_0460
Response regulator receiver protein; COGs: COG0784 FOG: CheY-like receiver; InterPro IPR001789:IPR013972; KEGG: cbe:Cbei_4174 response regulator receiver; PFAM: YcbB domain protein; response regulator receiver; SMART: response regulator receiver; SPTR: Response regulator receiver; PFAM: Response regulator receiver domain; YcbB domain.
  
     0.562
Toce_1595
KEGG: amt:Amet_0729 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.443
Toce_2142
pro-sigmaK processing inhibitor BofA; InterPro IPR010001; KEGG: amt:Amet_4774 sigmaK-factor processing regulatory BofA; PFAM: sigmaK-factor processing regulatory BofA; SPTR: SigmaK-factor processing regulatory BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: SigmaK-factor processing regulatory protein BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA.
  
     0.405
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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