Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1888S-layer domain protein; InterPro IPR005075:IPR001119; KEGG: dsy:DSY4050 hypothetical protein; PFAM: S-layer domain protein; Propeptide PepSY amd peptidase M4; SPTR: Putative uncharacterized protein; PFAM: S-layer homology domain; Peptidase propeptide and YPEB domain; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. (726 aa)    
Predicted Functional Partners:
Toce_0875
KEGG: tte:TTE2401 hypothetical protein; SPTR: Putative transmembrane anti-sigma factor; PFAM: Predicted integral membrane protein (DUF2275).
  
     0.752
Toce_1880
Copper amine oxidase domain protein; COGs: COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; InterPro IPR012854; KEGG: tit:Thit_0459 hypothetical protein; PFAM: copper amine oxidase domain protein; SPTR: Putative uncharacterized protein; PFAM: Copper amine oxidase N-terminal domain; Predicted periplasmic protein (DUF2233).
  
     0.752
Toce_2232
InterPro IPR018604; KEGG: tit:Thit_2308 protein of unknown function YycH; PFAM: Protein of unknown function YycH; SPTR: Putative uncharacterized protein; PFAM: YycH protein.
  
     0.745
Toce_0877
KEGG: tpd:Teth39_0292 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.729
Toce_0869
KEGG: tit:Thit_1631 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.634
Toce_0487
O-antigen polymerase; InterPro IPR019734:IPR013026:IPR007016; KEGG: tte:TTE0644 TPR repeat-containing protein; PFAM: O-antigen polymerase; SPTR: TPR-repeat-containing proteins; PFAM: O-Antigen ligase.
  
     0.621
Toce_0878
ErfK/YbiS/YcfS/YnhG family protein; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: cbi:CLJ_B0018 ErfK/YbiS/YcfS/YnhG family protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain.
  
     0.613
Toce_0630
InterPro IPR012854; KEGG: tit:Thit_0521 copper amine oxidase domain protein; PFAM: copper amine oxidase domain protein; SPTR: Copper amine oxidase domain protein; PFAM: Copper amine oxidase N-terminal domain.
  
     0.611
Toce_2233
YycH family protein; COGs: COG4863 conserved hypothetical protein; InterPro IPR009996; KEGG: amt:Amet_4755 hypothetical protein; PFAM: YycH family protein; SPTR: Putative uncharacterized protein; PFAM: YycH protein.
  
     0.594
Toce_2007
KEGG: swo:Swol_2165 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.590
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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