STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1921InterPro IPR007813; KEGG: mta:Moth_1544 fimbrial assembly; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly; PFAM: Fimbrial assembly protein (PilN). (170 aa)    
Predicted Functional Partners:
Toce_1922
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: mta:Moth_1545 pilus-associated protein PilM; SPTR: Pilus-associated protein pilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
  
 
 0.946
Toce_1920
KEGG: mta:Moth_1543 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NPCBM/NEW2 domain; Pilus assembly protein, PilO.
  
 
 0.942
Toce_1329
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883:IPR003494; KEGG: mxa:MXAN_5776 type IV pilus biogenesis protein PilM; PFAM: cell division protein FtsA; SPTR: Type IV pilus biogenesis protein PilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; Cell division protein FtsA; TIGRFAM: type IV pilus assembly protein PilM.
  
 
 0.875
Toce_1327
KEGG: tpd:Teth39_1079 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Pilus assembly protein, PilO.
  
 
 0.780
Toce_1930
Type II secretion system protein E (GspE); COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593:IPR001482:IPR007831; KEGG: mta:Moth_1554 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; pilus retraction protein PilT; general secretory pathway protein E.
  
 
 0.722
Toce_1336
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831:IPR001482; KEGG: amt:Amet_3482 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: general secretory pathway protein E.
  
 
 0.682
Toce_1923
KEGG: dau:Daud_0997 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.640
Toce_1924
InterPro IPR012902; KEGG: dau:Daud_0973 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein J.
     
 0.621
Toce_1925
InterPro IPR012902; KEGG: dae:Dtox_2704 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
     
 0.559
Toce_1926
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
     
 0.514
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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