Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Toce_1924InterPro IPR012902; KEGG: dau:Daud_0973 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein J. (180 aa)    
Predicted Functional Partners:
Toce_1925
InterPro IPR012902; KEGG: dae:Dtox_2704 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
  
 0.961
Toce_1923
KEGG: dau:Daud_0997 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.930
Toce_0037
KEGG: mta:Moth_0200 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.752
Toce_1922
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: mta:Moth_1545 pilus-associated protein PilM; SPTR: Pilus-associated protein pilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
   
 0.738
Toce_1926
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.737
Toce_0347
S-layer domain protein; InterPro IPR001119:IPR001330; KEGG: pth:PTH_1483 hypothetical protein; PFAM: S-layer domain protein; Prenyltransferase/squalene oxidase; SPTR: Hypothetical membrane protein; PFAM: Prenyltransferase and squalene oxidase repeat; S-layer homology domain.
 
     0.704
Toce_2156
KEGG: dau:Daud_0974 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.704
Toce_1927
N-terminal methylation; COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterPro IPR001120:IPR000983:IPR012902; KEGG: mta:Moth_1551 N-terminal methylation; SPTR: N-terminal methylation; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.633
Toce_1220
KEGG: tpd:Teth39_2126 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.575
Toce_1921
InterPro IPR007813; KEGG: mta:Moth_1544 fimbrial assembly; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly; PFAM: Fimbrial assembly protein (PilN).
  
  
 0.558
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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