STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1925InterPro IPR012902; KEGG: dae:Dtox_2704 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (142 aa)    
Predicted Functional Partners:
Toce_1924
InterPro IPR012902; KEGG: dau:Daud_0973 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein J.
  
  
 0.957
Toce_1923
KEGG: dau:Daud_0997 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.934
Toce_1331
Hypothetical protein; InterPro IPR012902:IPR001120; KEGG: dae:Dtox_2703 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
  
 0.733
Toce_2156
KEGG: dau:Daud_0974 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.674
Toce_1926
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
     
 0.658
Toce_1922
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: mta:Moth_1545 pilus-associated protein PilM; SPTR: Pilus-associated protein pilM; TIGRFAM: type IV pilus assembly protein PilM; PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
     
 0.653
Toce_0895
DNA internalization-related competence protein ComEC/Rec2; COGs: COG2333 hydrolase (metallo-beta-lactamase superfamily); InterPro IPR004797:IPR004477; KEGG: tit:Thit_0878 DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; SPTR: DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
     
 0.582
Toce_1921
InterPro IPR007813; KEGG: mta:Moth_1544 fimbrial assembly; PFAM: Fimbrial assembly family protein; SPTR: Fimbrial assembly; PFAM: Fimbrial assembly protein (PilN).
     
 0.559
Toce_1920
KEGG: mta:Moth_1543 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: NPCBM/NEW2 domain; Pilus assembly protein, PilO.
     
 0.558
Toce_1927
N-terminal methylation; COGs: COG2165 Type II secretory pathway pseudopilin PulG; InterPro IPR001120:IPR000983:IPR012902; KEGG: mta:Moth_1551 N-terminal methylation; SPTR: N-terminal methylation; PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain.
     
 0.450
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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