Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1941InterPro IPR000305; KEGG: sal:Sala_0696 hypothetical protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: Putative uncharacterized protein; PFAM: GIY-YIG catalytic domain. (268 aa)    
Predicted Functional Partners:
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.654
Toce_1942
Protein of unknown function DUF1524 RloF; InterPro IPR004919:IPR011089; KEGG: eta:ETA_13690 hypothetical protein; PFAM: protein of unknown function DUF1524 RloF; protein of unknown function DUF262; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1524); Protein of unknown function DUF262.
       0.618
Toce_1943
Protein of unknown function DUF262; InterPro IPR004919; KEGG: eta:ETA_13690 hypothetical protein; PFAM: protein of unknown function DUF262; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF262.
       0.546
Toce_1588
COGs: COG0438 Glycosyltransferase; InterProIPR001296:IPR013216:IPR001173:IPR019734:IPR 013026:IPR000276; KEGG: tnp:Tnap_0554 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; SMART: Tetratricopeptide repeat; SPTR: Glycosyl transferase family 2; PFAM: Methyltransferase domain; Glycosyl transferases group 1; Glycosyl transferase family 2.
  
  
 0.433
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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