Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Toce_1942Protein of unknown function DUF1524 RloF; InterPro IPR004919:IPR011089; KEGG: eta:ETA_13690 hypothetical protein; PFAM: protein of unknown function DUF1524 RloF; protein of unknown function DUF262; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1524); Protein of unknown function DUF262. (545 aa)    
Predicted Functional Partners:
Toce_1943
Protein of unknown function DUF262; InterPro IPR004919; KEGG: eta:ETA_13690 hypothetical protein; PFAM: protein of unknown function DUF262; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function DUF262.
      0.966
Toce_1941
InterPro IPR000305; KEGG: sal:Sala_0696 hypothetical protein; SMART: Excinuclease ABC C subunit domain protein; SPTR: Putative uncharacterized protein; PFAM: GIY-YIG catalytic domain.
       0.618
Toce_2186
TrkA-C domain protein; COGs: COG0490 Putative regulatory ligand-binding protein related to C-terminal domains of K+ channels; InterPro IPR000524:IPR006037; KEGG: tex:Teth514_1200 TrkA domain-containing protein; PFAM: TrkA-C domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: TrkA-C domain protein; PFAM: Bacterial regulatory proteins, gntR family; TrkA-C domain.
  
     0.429
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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