Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Toce_1969YbbR family protein; COGs: COG4856 conserved hypothetical protein; InterPro IPR012505; KEGG: tpd:Teth39_0458 YbbR family protein; PFAM: YbbR family protein; SPTR: YbbR family protein; PFAM: YbbR-like protein. (401 aa)    
Predicted Functional Partners:
dacA
Protein of unknown function DUF147; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.976
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.730
Toce_1971
KEGG: nth:Nther_2043 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.581
Toce_1762
UspA domain protein; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR006016; KEGG: tpd:Teth39_0454 osmosensitive K+ channel histidine kinase-like protein; PFAM: UspA domain protein; SPTR: UspA domain protein; PFAM: Universal stress protein family.
 
   
 0.471
Toce_2232
InterPro IPR018604; KEGG: tit:Thit_2308 protein of unknown function YycH; PFAM: Protein of unknown function YycH; SPTR: Putative uncharacterized protein; PFAM: YycH protein.
  
     0.461
Toce_0474
KEGG: amt:Amet_0695 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.455
glmS
Glutamine--fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.448
Toce_2253
COGs: COG3887 signaling protein consisting of a modified GGDEF domain and a DHH domain; InterPro IPR000160:IPR001667:IPR003156; KEGG: aoe:Clos_2799 phosphoesterase domain-containing protein; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SPTR: Phosphoesterase RecJ domain protein; PFAM: DHH family; DHHA1 domain.
  
   
 0.436
Toce_1972
Iron-only hydrogenase maturation protein HydF; COGs: COG1160 GTPase; InterPro IPR001806:IPR005225:IPR002917; KEGG: tpd:Teth39_0245 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: Small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
       0.423
Toce_0779
3D domain protein; COGs: COG3583 conserved hypothetical protein; InterPro IPR011098:IPR007137:IPR010611; KEGG: mta:Moth_0051 hypothetical protein; PFAM: 3D domain protein; G5 domain protein; protein of unknown function DUF348; SPTR: Putative uncharacterized protein; PFAM: 3D domain; Domain of unknown function (DUF348); G5 domain.
 
     0.416
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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