STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1993Hypothetical protein; KEGG: amt:Amet_1498 copper amine oxidase domain-containing protein; SPTR: Copper amine oxidase domain protein. (241 aa)    
Predicted Functional Partners:
Toce_0009
KEGG: pth:PTH_1732 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.595
Toce_1994
3H domain protein; COGs: COG1827 small molecule binding protein (contains 3H domain); InterPro IPR004173; KEGG: tpd:Teth39_1758 3H domain-containing protein; PFAM: 3H domain protein; SPTR: Putative uncharacterized protein; PFAM: HTH domain; 3H domain.
       0.520
Toce_0474
KEGG: amt:Amet_0695 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.488
Toce_1991
Anaerobic ribonucleoside-triphosphate reductase activating protein; COGs: COG1180 Pyruvate-formate lyase-activating enzyme; InterPro IPR012840:IPR007197; KEGG: tpd:Teth39_0654 anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; SPTR: Anaerobic ribonucleoside-triphosphate reductase activating protein; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM superfamily; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein.
       0.436
Toce_1992
COGs: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; InterPro IPR012833:IPR005144; KEGG: ate:Athe_0548 anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; SPTR: Anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP cone domain; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase.
       0.436
Toce_1990
YKOF domain protein; InterPro IPR011522; KEGG: mta:Moth_2201 hypothetical protein; PFAM: YKOF domain protein; SPTR: Putative uncharacterized protein; PFAM: YKOF-related Family.
       0.428
Toce_0006
KEGG: dae:Dtox_0005 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.419
Toce_2143
KEGG: hor:Hore_20750 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2508).
  
     0.405
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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