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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_1996KEGG: tex:Teth514_0476 hypothetical protein; SPTR: Putative uncharacterized protein. (163 aa)    
Predicted Functional Partners:
Toce_1994
3H domain protein; COGs: COG1827 small molecule binding protein (contains 3H domain); InterPro IPR004173; KEGG: tpd:Teth39_1758 3H domain-containing protein; PFAM: 3H domain protein; SPTR: Putative uncharacterized protein; PFAM: HTH domain; 3H domain.
 
   
 0.547
Toce_2085
COGs: COG4684 membrane protein; KEGG: tpd:Teth39_0308 membrane protein-like protein; SPTR: Membrane protein-like protein.
 
   
 0.509
Toce_0890
KEGG: cbb:CLD_1205 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.465
Toce_2044
COGs: COG1527 H+-ATPase subunit C; InterPro IPR002843; KEGG: tpd:Teth39_2261 V-type ATP synthase subunit C; PFAM: H+transporting two-sector ATPase C (AC39) subunit; SPTR: H(+)-transporting two-sector ATPase; PFAM: ATP synthase (C/AC39) subunit.
 
     0.456
Toce_2043
COGs: COG1436 H+-ATPase subunit F; InterPro IPR008218; KEGG: tit:Thit_2334 vacuolar H+transporting two-sector ATPase F subunit; PFAM: Vacuolar H+transporting two-sector ATPase F subunit; SPTR: Vacuolar H+transporting two-sector ATPase F subunit; PFAM: ATP synthase (F/14-kDa) subunit.
 
     0.433
polC
DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
      
 0.428
csrA
Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
      
 0.418
Toce_1270
Serine-type D-Ala-D-Ala carboxypeptidase; COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR001967:IPR012907:IPR018044; KEGG: aoe:Clos_1588 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain; Belongs to the peptidase S11 family.
      
 0.404
Toce_0867
Putative signal transduction protein with CBS and DRTGG domains; COGs: COG4109 transcriptional regulator protein containing CBS domains; InterPro IPR000644:IPR010766; KEGG: gwc:GWCH70_2695 putative signal transduction protein with CBS and DRTGG domains; PFAM: DRTGG domain protein; CBS domain containing protein; SMART: CBS domain containing protein; SPTR: Putative signal transduction protein with CBS and DRTGG domains; PFAM: DRTGG domain; CBS domain; Bacterial regulatory proteins, gntR family.
  
     0.401
atpD-3
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.401
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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