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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zupTZinc/iron permease; Mediates zinc uptake. May also transport other divalent cations; Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily. (273 aa)    
Predicted Functional Partners:
Toce_1552
Bilirubin oxidase; COGs: COG2132 Putative multicopper oxidase; InterPro IPR011707:IPR011706; KEGG: bcl:ABC2649 spore coat protein; PFAM: multicopper oxidase type 2; multicopper oxidase type 3; PRIAM: Bilirubin oxidase; SPTR: Spore coat protein; PFAM: Multicopper oxidase.
   
 0.926
Toce_1997
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.
       0.553
Toce_1998
Peptidase M20; COGs: COG4187 Arginine degradation protein (predicted deacylase); InterPro IPR012166:IPR002933; KEGG: aoe:Clos_0189 peptidase M20; PFAM: peptidase M20; SPTR: Peptidase M20; PFAM: Peptidase family M20/M25/M40.
       0.553
Toce_1588
COGs: COG0438 Glycosyltransferase; InterProIPR001296:IPR013216:IPR001173:IPR019734:IPR 013026:IPR000276; KEGG: tnp:Tnap_0554 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; Methyltransferase type 11; glycosyl transferase group 1; SMART: Tetratricopeptide repeat; SPTR: Glycosyl transferase family 2; PFAM: Methyltransferase domain; Glycosyl transferases group 1; Glycosyl transferase family 2.
  
 
 0.548
Toce_2000
PAS modulated sigma54 specific transcriptional regulator, Fis family; COGs: COG3829 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains; InterProIPR000014:IPR003593:IPR002078:IPR020441:IPR 013656:IPR002197; KEGG: amt:Amet_2366 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS domain containing protein; SPTR: Sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: Bacterial regulatory protein [...]
       0.474
Toce_1750
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.445
Toce_0169
Small GTP-binding protein; COGs: COG0370 Fe2+ transport system protein B; InterPro IPR005225:IPR002917:IPR006073; KEGG: geo:Geob_2253 ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; SPTR: Ferrous iron transport protein B; TIGRFAM: small GTP-binding protein; PFAM: Ferrous iron transport protein B; TIGRFAM: small GTP-binding protein domain.
     
 0.428
Toce_0170
COGs: COG0370 Fe2+ transport system protein B; InterPro IPR011619:IPR011642:IPR011640; KEGG: gem:GM21_2625 ferrous iron transport protein B; PFAM: Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; SPTR: Ferrous iron transport protein B; PFAM: Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB.
     
 0.428
Toce_0629
COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: maq:Maqu_3250 cytochrome c biogenesis protein, transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: Cytochrome c biogenesis protein, transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region.
   
    0.426
Toce_0715
COGs: COG0785 Cytochrome c biogenesis protein; InterPro IPR003834; KEGG: csc:Csac_0411 cytochrome c biogenesis protein, transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; SPTR: Cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome C biogenesis protein transmembrane region.
   
    0.426
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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