STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2007KEGG: swo:Swol_2165 hypothetical protein; SPTR: Putative uncharacterized protein. (294 aa)    
Predicted Functional Partners:
Toce_0487
O-antigen polymerase; InterPro IPR019734:IPR013026:IPR007016; KEGG: tte:TTE0644 TPR repeat-containing protein; PFAM: O-antigen polymerase; SPTR: TPR-repeat-containing proteins; PFAM: O-Antigen ligase.
  
     0.768
Toce_2017
Protein of unknown function DUF1779; InterPro IPR014794; KEGG: tpd:Teth39_2101 hypothetical protein; PFAM: Protein of unknown function DUF1779; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1779).
 
     0.764
Toce_1383
KEGG: tte:TTE1137 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unkown function (DUF1901).
  
     0.758
Toce_1373
KEGG: tte:TTE1185 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.732
Toce_1005
Hypothetical protein; KEGG: tte:TTE1601 membrane-fusion protein; SPTR: Membrane-fusion protein; TIGRFAM: putative membrane fusion protein.
  
     0.705
Toce_1595
KEGG: amt:Amet_0729 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.700
Toce_0742
Rod shape-determining protein MreD; InterPro IPR007227:IPR017225; KEGG: dae:Dtox_3337 rod shape-determining protein MreD; SPTR: Rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD; PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD.
  
     0.666
Toce_1367
Von Willebrand factor type A; COGs: COG1240 Mg-chelatase subunit ChlD; InterPro IPR002035; KEGG: nth:Nther_2026 von Willebrand factor type A; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Von Willebrand factor, type A; PFAM: von Willebrand factor type A domain.
 
     0.660
Toce_2002
Hypothetical protein; InterPro IPR020365; KEGG: dau:Daud_1896 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.656
Toce_2009
Flagellar protein FlgJ; COGs: COG3951 Rod binding protein; InterPro IPR000423:IPR019301; KEGG: tte:TTE0174 flagellum-specific muramidase; PFAM: Flagellar protein FlgJ-like; SPTR: Flagellum-specific muramidase; PFAM: Rod binding protein.
 
     0.635
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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