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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpD-3V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. (208 aa)    
Predicted Functional Partners:
atpB-3
H+transporting two-sector ATPase alpha/beta subunit central region; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
 0.999
atpA-3
ATP synthase, A subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.999
Toce_2043
COGs: COG1436 H+-ATPase subunit F; InterPro IPR008218; KEGG: tit:Thit_2334 vacuolar H+transporting two-sector ATPase F subunit; PFAM: Vacuolar H+transporting two-sector ATPase F subunit; SPTR: Vacuolar H+transporting two-sector ATPase F subunit; PFAM: ATP synthase (F/14-kDa) subunit.
 
 0.999
Toce_2044
COGs: COG1527 H+-ATPase subunit C; InterPro IPR002843; KEGG: tpd:Teth39_2261 V-type ATP synthase subunit C; PFAM: H+transporting two-sector ATPase C (AC39) subunit; SPTR: H(+)-transporting two-sector ATPase; PFAM: ATP synthase (C/AC39) subunit.
 
 0.999
atpE-2
H+transporting two-sector ATPase E subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
Toce_2046
InterPro IPR002379; KEGG: tit:Thit_2337 H+transporting two-sector ATPase C subunit; PFAM: H+transporting two-sector ATPase C subunit; SPTR: H+-transporting two-sector ATPase, C subunit; PFAM: ATP synthase subunit C.
 
 0.999
Toce_2047
V-type ATPase 116 kDa subunit; COGs: COG1269 H+-ATPase subunit I; InterPro IPR002490; KEGG: tit:Thit_2338 V-type ATPase 116 kDa subunit; PFAM: V-type ATPase 116 kDa subunit; SPTR: H(+)-transporting two-sector ATPase; PFAM: V-type ATPase 116kDa subunit family.
 
 0.999
atpA
H+transporting two-sector ATPase alpha/beta subunit central region; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.
 
 0.997
atpB
H+transporting two-sector ATPase alpha/beta subunit central region; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
 0.997
Toce_1719
COGs: COG1527 H+-ATPase subunit C; InterPro IPR002843; KEGG: ctc:CTC02332 V-type sodium ATP synthase subunit C; PFAM: H+transporting two-sector ATPase C (AC39) subunit; SPTR: V-type sodium ATP synthase subunit C; PFAM: ATP synthase (C/AC39) subunit.
  
 0.984
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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