STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Toce_2079Shikimate/quinate 5-dehydrogenase; COGs: COG5322 dehydrogenase; InterPro IPR006151; KEGG: tit:Thit_2042 shikimate/quinate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; SPTR: Shikimate/quinate 5-dehydrogenase; PFAM: Shikimate / quinate 5-dehydrogenase. (364 aa)    
Predicted Functional Partners:
Toce_2080
KEGG: tte:TTE2375 hypothetical protein; SPTR: Putative uncharacterized protein.
     0.995
Toce_0940
COGs: COG4992 Ornithine/acetylornithine aminotransferase; InterPro IPR005814; KEGG: mta:Moth_1785 aminotransferase; PFAM: aminotransferase class-III; PRIAM: Acetylornithine transaminase; SPTR: Aminotransferase; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     0.971
Toce_2081
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: mta:Moth_0148 putative transcriptional regulator; PFAM: helix-turn-helix domain protein; SPTR: Putative uncharacterized protein; PFAM: Helix-turn-helix.
 
     0.932
Toce_0045
KEGG: tpd:Teth39_0178 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; SPTR: Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; PFAM: Uncharacterized protein family UPF0007.
 
     0.776
Toce_0971
Protein of unknown function DUF1614; InterPro IPR011672; KEGG: tpd:Teth39_0832 hypothetical protein; PFAM: protein of unknown function DUF1614; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1614).
  
     0.739
Toce_0216
Rubrerythrin; InterPro IPR003251:IPR009040; KEGG: tye:THEYE_A1650 rubrerythrin subfamily; PFAM: Rubrerythrin; SPTR: Rubrerythrin subfamily; PFAM: Rubrerythrin.
   
 
 0.684
Toce_0223
Rubrerythrin; InterPro IPR003251; KEGG: hbu:Hbut_1530 hypothetical protein; PFAM: Rubrerythrin; SPTR: Conserved archaeal protein; PFAM: Rubrerythrin.
   
 
 0.684
Toce_0972
InterPro IPR010897; KEGG: tit:Thit_1462 stage II sporulation protein P; PFAM: Stage II sporulation P family protein; SPTR: Stage II sporulation P family protein; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation protein P (SpoIIP); TIGRFAM: stage II sporulation protein P.
  
     0.669
Toce_2083
tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.667
coaX
Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.645
Your Current Organism:
Thermosediminibacter oceani
NCBI taxonomy Id: 555079
Other names: T. oceani DSM 16646, Thermosediminibacter oceani DSM 16646, Thermosediminibacter oceani JW/IW-1228P, Thermosediminibacter oceani str. DSM 16646, Thermosediminibacter oceani strain DSM 16646
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.